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HDR habilitation

I defended my HDR habilitation, “Statistical methods and software for the analysis of transcriptomic data” on September 26, 2017 at the Université d’Évry Val-d’Essonne. Many thanks to the members of my evaluation committee (Franck Picard, Nathalie Villa-Vialaneix, Anne-Laure Boulesteix, Christophe Ambroise, David Causeur, and Stéphane Robin), as well as to all of my INRA/GABI colleagues who came out to support me!

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coseq now available from Bioconductor

Our package coseq is now available on Bioconductor — check it out for co-expression analyses of RNA-seq data after applying appropriate transformations and using Gaussian mixture models, feedback is welcome! (more…)

Congratulations, Dr. Mélina Gallopin!

Congratulations to Dr. Mélina Gallopin on the successful defense of her Ph.D. “Clustering and network inference for RNA-seq data” on December 9, 2015! Abstract below…

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BioBayes book published!

Our book, Introduction to Bayesian Statistics: Theoretical Foundations and Applications in Food Sciences, Environment, Epidemiology, and Genetics, was recently published (in French) by the BioBayes group (Éditions Ellipses). Abstract below… (more…)

HTSCluster paper published in Bioinformatics

Our work describing a method for co-expression analyses of RNA-seq data using our R package HTSCluster was recently published in Bioinformatics (doi: 10.1093/bioinformatics/btu845). Abstract below… (more…)

RNA-seq differential meta-analysis paper published in BMC Bioinformatics

Our work describing techniques for differential analyses of RNA-seq data arising from multiple studies was recently published in BMC Bioinformatics as a highly accessed paper (doi:10.1186/1471-2105-15-91). highlyaccessed-large

Abstract below… (more…)

Causal network inference for knock-out and observational data published in BMC Systems Biology

Our paper describing the joint estimation of causal effects from intervention and observational gene expression data using causal Gaussian Bayesian networks and a Mallows proposal distribution was recently published in BMC Systems Biology  (doi:10.1186/1752-0509-7-111).

Abstract below… (more…)