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Software

  • Edge in TCGA: An R/Shiny interactive web application for the exploration of drivers of gene expression in The Cancer Genome Atlas.
  • coseq: Co-expression analysis of sequencing data.
  • ICAL: Model selection for model based clustering of annotated data.
  • metaRNASeq: Meta-analysis of RNA-seq data.
    • Release version available on CRAN.
    • Development version available on the R-Forge.
  • HTSDiff: Differential analysis for RNA-seq data.
    • Development version available on the R-Forge.
  • HTSFilter: Filter for replicated high-throughput sequencing data.
  • HTSCluster: Clustering high-throughput sequencing data.
    • Release version available on CRAN.
    • Development version available on the R-Forge.
  • ebdbNet: Empirical Bayes estimation for dynamic Bayesian networks.
    • Release version available on CRAN.
    • Development version available on Github.
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