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- maskmeans: Multi-view agglomeration/splitting K-means clustering algorithm
- Development version available on GitHub.
- Edge in TCGA: An R/Shiny interactive web application for the exploration of drivers of gene expression in The Cancer Genome Atlas.
- Release version available on shinyapps.io.
- coseq: Co-expression analysis of sequencing data.
- ICAL: Model selection for model based clustering of annotated data.
- Available on Github.
- metaRNASeq: Meta-analysis of RNA-seq data.
- HTSDiff: Differential analysis for RNA-seq data.
- Development version available on the R-Forge.
- HTSFilter: Filter for replicated high-throughput sequencing data.
- HTSCluster: Clustering high-throughput sequencing data.
- ebdbNet: Empirical Bayes estimation for dynamic Bayesian networks.